Index

_

_repr_tty_() (sample_sheet.SampleSheet method)

_sum_cycles_from_tokens() (sample_sheet.ReadStructure method)

A

add_sample() (sample_sheet.SampleSheet method) add_samples() (sample_sheet.SampleSheet method)

add_section() (sample_sheet.SampleSheet method) all_sample_keys (sample_sheet.SampleSheet attribute)

C

copy() (sample_sheet.ReadStructure method)

E

experimental_design (sample_sheet.SampleSheet attribute)

H

has_indexes (sample_sheet.ReadStructure attribute)

has_skips (sample_sheet.ReadStructure attribute) has_umi (sample_sheet.ReadStructure attribute)

I

index_cycles (sample_sheet.ReadStructure attribute) index_tokens (sample_sheet.ReadStructure attribute) is_dual_indexed (sample_sheet.ReadStructure attribute) is_indexed (sample_sheet.ReadStructure attribute) is_ipython_interpreter() (in module sample_sheet.util)

is_paired_end (sample_sheet.ReadStructure attribute) (sample_sheet.SampleSheet attribute) is_single_end (sample_sheet.ReadStructure attribute) (sample_sheet.SampleSheet attribute) is_single_indexed (sample_sheet.ReadStructure attribute)

M

maybe_render_markdown() (in module sample_sheet.util)

R

ReadStructure (class in sample_sheet)

S

Sample (class in sample_sheet) sample_sheet (module) sample_sheet.util (module)

samples (sample_sheet.SampleSheet attribute) SampleSheet (class in sample_sheet) skip_cycles (sample_sheet.ReadStructure attribute) skip_tokens (sample_sheet.ReadStructure attribute)

T

template_cycles (sample_sheet.ReadStructure attribute) template_tokens (sample_sheet.ReadStructure attribute) to_json() (sample_sheet.Sample method) (sample_sheet.SampleSheet method)

to_picard_basecalling_params() (sample_sheet.SampleSheet method) tokens (sample_sheet.ReadStructure attribute) total_cycles (sample_sheet.ReadStructure attribute)

U

umi_cycles (sample_sheet.ReadStructure attribute)

umi_tokens (sample_sheet.ReadStructure attribute)

W

write() (sample_sheet.SampleSheet method)